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Edo Plantinga
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50
@edo-plantinga-524
Last seen 10.2 years ago
Dear all,
I would like to use Limma to read in not only the signal and
background value, but also to read in additional spot data (spot
quality flags, in this case). Our lab uses Imagene for the image
processing of slides. Is there any way I can do this without
completely hacking the source code and without reading the same files
twice? If not, what would be the best way to do this?
Secondly, is there a particular reason why the mean signal is read in
into Limma, but the median background is read? I would like to be able
to read in the median spot intensities. Again, is this possible
without too much hacking?
Regards,
Edo Plantinga
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