Entering edit mode
Ernest Turro
▴
30
@ernest-turro-4127
Last seen 10.2 years ago
Hi,
You might want to try my R package mmbgx. The package includes pre-
defined probe-probeset mappings obtained from X:Map, which makes it
too big for Bioconductor (135MB). I will adapt it to work with
xmapcore, though, and then submit it to Bioconductor. I thought it
might be useful to some of you in the meantime. It's available from
http://bgx.org.uk/software/mmbgx.html .
Ernest
On 3 Aug 2010, at 08:23, Tim Yates wrote:
> Exonmap has been deprecated in favour of xmapcore
>
> http://www.bioconductor.org/packages/release/bioc/html/xmapcore.html
>
> It still requires a MySQL database be installed locally, but no
longer
> requires you to install the Ensembl database as well
>
> Tim
>
>
> On 02/08/2010 22:04, "Bhatti, Gaurav" <gbhatti at="" med.wayne.edu="">
wrote:
>
>> Hey
>> Try exonmap. It involves installation of MySQL. If you don't want
to do that
>> then try aroma.affymetrix. They have a very comprehensive website
>> http://www.aroma-project.org/
>>
>> Gaurav Bhatti
>>
>> -----Original Message-----
>> From: bioconductor-bounces at stat.math.ethz.ch
>> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of
Jinyan Huang
>> Sent: Monday, August 02, 2010 4:44 PM
>> To: Bioconductor mailing list
>> Subject: [BioC] Human Affymetrix Exon microarrays
>>
>> Hi all,
>>
>> Do you have some packages recommend for Human Affymetrix Exon 1.0
st
>> microarrays?
>>
>> Thanks.
>>
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