method and package for imputing spectral counts from masspectrometry
1
0
Entering edit mode
Yolande Tra ▴ 120
@yolande-tra-4309
Last seen 10.2 years ago
Hello list members, I would like to start a new thread here. Does anyone have experience in imputing spectral counts from mass spectrometry? I have used na.roughfix followed by RFImpute in Random Forest package to impute the missing spectral counts. It seems that the imputation brought skewness in the data. I believe, there must be a solution, instead of filling in a zero. Thank you for sharing your experience. Yolande
• 1.2k views
ADD COMMENT
0
Entering edit mode
@moshe-olshansky-2329
Last seen 10.2 years ago
Hi Yolande, Do you mean the raw counts coming out of the instrument before any preprocessing? Regards, Moshe. --- On Tue, 26/10/10, Yolande Tra <yolande.tra at="" gmail.com=""> wrote: > From: Yolande Tra <yolande.tra at="" gmail.com=""> > Subject: [BioC] method and package for imputing spectral counts from masspectrometry > To: bioconductor at stat.math.ethz.ch > Received: Tuesday, 26 October, 2010, 11:11 AM > Hello list members, > > I would like to start a new thread here. Does anyone have > experience > in imputing spectral counts from mass spectrometry? I have > used > na.roughfix followed by RFImpute in Random Forest package > to impute > the missing spectral counts. It seems that the imputation > brought > skewness in the data. I believe, there must be a solution, > instead of > filling in a zero. > > Thank you for sharing your experience. > Yolande > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD COMMENT
0
Entering edit mode
Yes. Yolande On Tue, Oct 26, 2010 at 1:56 AM, Moshe Olshansky <m_olshansky at="" yahoo.com=""> wrote: > Hi Yolande, > > Do you mean the raw counts coming out of the instrument before any preprocessing? > > Regards, > Moshe. > > --- On Tue, 26/10/10, Yolande Tra <yolande.tra at="" gmail.com=""> wrote: > >> From: Yolande Tra <yolande.tra at="" gmail.com=""> >> Subject: [BioC] method and package for imputing spectral counts from masspectrometry >> To: bioconductor at stat.math.ethz.ch >> Received: Tuesday, 26 October, 2010, 11:11 AM >> Hello list members, >> >> I would like to start a new thread here. Does anyone have >> experience >> in imputing spectral counts from mass spectrometry? I have >> used >> na.roughfix followed by RFImpute in Random Forest package >> to impute >> the missing spectral counts. It seems that the imputation >> brought >> skewness in the data. I believe, there must be a solution, >> instead of >> filling in a zero. >> >> Thank you for sharing your experience. >> Yolande >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> >
ADD REPLY

Login before adding your answer.

Traffic: 582 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6