thanks for reporting back to the list... b On 22 October 2010 22:18, Jon T <jt.compbio at="" gmail.com=""> wrote: > Thanks Jim, > > Benilton Carvalho suggested updating R to 2.12.0 and that worked. > > Jon > > > > On Fri, Oct 22, 2010 at 11:20 AM, James W. MacDonald <jmacdon at="" med.umich.edu=""> > wrote: >> >> Hi Jon, >> >> On 10/22/2010 1:58 PM, Jon T wrote: >>> >>> Hi, >>> I'm trying to preprocess Affymetrix Gene 1.0 ST array data using oligo, >>> and >>> it says in the vignette to use the function getNetAffx() to retrieve >>> NetAffx >>> biological annotation information. ?When I try to run it, I get an error >>> message saying that the function can't be found. ?Is there a bioconductor >>> package I need to install? >> >> Yes, you need oligo installed and loaded. You don't give your >> sessionInfo(), so it is impossible to know if you have done the latter (or >> the former, for that matter). But in a current release version of BioC, I >> have this function. >> >> Best, >> >> Jim >> >> >>> >>>> featureData(genePS)<- getNetAffx(genePS, "probeset") >>> >>> Error: could not find function "getNetAffx" >>> >>> Thanks, >>> Jon >>> >>> ? ? ? ?[[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> -- >> James W. MacDonald, M.S. >> Biostatistician >> Douglas Lab >> University of Michigan >> Department of Human Genetics >> 5912 Buhl >> 1241 E. Catherine St. >> Ann Arbor MI 48109-5618 >> 734-615-7826 >> ********************************************************** >> Electronic Mail is not secure, may not be read every day, and should not >> be used for urgent or sensitive issues > >