Hi, I just installed R.2.12 and started installing BioC packages using bioCLite. everything worked ok but of all libraries I installed the 'affy' is not working. The library is installed though. library(affy) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/ Versions/2.12/Resources/library/affyio/libs/x86_64/affyio.so': dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/ library/affyio/libs/x86_64/affyio.so, 6): Library not loaded: /Library/ Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib Referenced from: /Library/Frameworks/R.framework/Versions/2.12/ Resources/library/affyio/libs/x86_64/affyio.so Reason: image not found Error: package/namespace load failed for 'affy' sessionInfo() R version 2.12.0 (2010-10-15) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] lattice_0.19-13 limma_3.6.0 edgeR_1.8.0 Biobase_2.10.0 loaded via a namespace (and not attached): [1] grid_2.12.0 tools_2.12.0 Mayte Suarez-Farinas Research Associate, The Rockefeller University Biostatistician, The Rockefeller University Hospital 1230 York Ave, Box 178, New York, NY, 10065 +1(212) 327-8213

On 10/21/2010 12:14 PM, Mayte Suarez-Farinas wrote: > Hi, > I just installed R.2.12 > and started installing BioC packages using bioCLite. > everything worked ok but of all libraries I installed the 'affy' is not > working. > The library is installed though. > > library(affy) > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/Library/Frameworks/R.framework/Versions/2.12/Resources/library/aff yio/libs/x86_64/affyio.so': > > > dlopen(/Library/Frameworks/R.framework/Versions/2.12/Resources/libra ry/affyio/libs/x86_64/affyio.so, > 6): Library not loaded: > /Library/Frameworks/R.framework/Versions/2.11/Resources/lib/libR.dylib Hi Mayte -- the '2.11' indicates that the affyio library is trying to use the wrong version of R. Try re-installing affyio with biocLite('affyio'). Martin > Referenced from: > /Library/Frameworks/R.framework/Versions/2.12/Resources/library/affy io/libs/x86_64/affyio.so > > Reason: image not found > Error: package/namespace load failed for 'affy' > > > sessionInfo() > R version 2.12.0 (2010-10-15) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] lattice_0.19-13 limma_3.6.0 edgeR_1.8.0 Biobase_2.10.0 > > loaded via a namespace (and not attached): > [1] grid_2.12.0 tools_2.12.0 > > > > Mayte Suarez-Farinas > Research Associate, The Rockefeller University > Biostatistician, The Rockefeller University Hospital > 1230 York Ave, Box 178, > New York, NY, 10065 > +1(212) 327-8213 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793