Entering edit mode
Hi Daniel,
First to thank all Bioc people for making/supporting/advising great
libraries.
I also use Xps and I remember Christian (the author) said to me
once that he is aiming to add/implement affyplm . In the mean time I
used Aroma package (which is out of BioC) since they tweaked affyplm
and this R tool can also work on "standard" desktop PC.
The probeLm residual figures showed ( for our assay with Human Exon
1.0 ST Array), some chips with hybridization artifacts... so we
informed the company doing the hybridization and they were willing to
re-hybridize the chips.
Best,
Branko