Entering edit mode
Tim Smith
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@tim-smith-1532
Last seen 10.3 years ago
Hi,
I was trying to install the int.geneint.db package, but was getting
errors:
> source("http://bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
Warning messages:
1: In safeSource() : Redefining âbiocinstallâ
2: In safeSource() : Redefining âbiocinstallPkgGroupsâ
3: In safeSource() : Redefining âbiocinstallReposâ
> biocLite("int.geneint.db")
Using R version 2.11.1, biocinstall version 2.6.8.
Installing Bioconductor version 2.6 packages:
[1] "int.geneint.db"
Please wait...
Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
argument 'lib' is missing: using '/Users/nj/Library/R/2.11/library'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package âint.geneint.dbâ is not available
> library("int.geneint.db")
Error in library("int.geneint.db") :
there is no package called 'int.geneint.db'
>
My sessionInfo():
> sessionInfo()
R version 2.11.1 (2010-05-31)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods
base
other attached packages:
[1] colorRamps_2.3 org.Hs.eg.db_2.4.1
lumiHumanIDMapping_1.6.2
[4] lumi_1.14.0 preprocessCore_1.10.0 mgcv_1.6-2
[7] affy_1.26.1 annotate_1.26.1 methylumi_1.3.3
[10] GOstats_2.14.0 RSQLite_0.9-1 DBI_0.2-5
[13] graph_1.26.0 Category_2.14.0
AnnotationDbi_1.10.1
[16] Biobase_2.8.0 biclust_0.9.1 vcd_1.2-8
[19] colorspace_1.0-1 MASS_7.3-6 isa2_0.2.1
[22] gplots_2.8.0 caTools_1.10 bitops_1.0-4.1
[25] gdata_2.7.2 gtools_2.6.2
heatmap.plus_1.3
loaded via a namespace (and not attached):
[1] affyio_1.16.0 genefilter_1.30.0 GO.db_2.4.1
GSEABase_1.10.0
[5] lattice_0.18-8 Matrix_0.999375-39 nlme_3.1-96
RBGL_1.24.0
[9] splines_2.11.1 survival_2.35-8 tools_2.11.1
XML_3.1-0
[13] xtable_1.5-6
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