When I try to install DESeq. I got these errors. For differential expression analysis, have you compare with cuffdiff tools? Thanks. > source("http://www.bioconductor.org/biocLite.R") > biocLite("DESeq") Using R version 2.10.1, biocinstall version 2.5.11. Installing Bioconductor version 2.5 packages: [1] "DESeq" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?DESeq? is not available > sessionInfo() R version 2.10.1 (2009-12-14) i386-apple-darwin10.2.0 locale: [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.10.1

please upgrade to R 2.11 -- i don't think DESeq was available for 2.10 On Fri, Jul 23, 2010 at 6:13 PM, Jinyan Huang <jhuang.ceph at="" gmail.com=""> wrote: > When I try to install DESeq. I got these errors. > For differential expression analysis, have you compare with cuffdiff > tools? Thanks. > >> source("http://www.bioconductor.org/biocLite.R") >> biocLite("DESeq") > Using R version 2.10.1, biocinstall version 2.5.11. > Installing Bioconductor version 2.5 packages: > [1] "DESeq" > Please wait... > > Warning message: > In getDependencies(pkgs, dependencies, available, lib) : > ?package ?DESeq? is not available >> sessionInfo() > R version 2.10.1 (2009-12-14) > i386-apple-darwin10.2.0 > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/C > > attached base packages: > [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base > > loaded via a namespace (and not attached): > [1] tools_2.10.1 > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >