Hi all, My data is from GoldenGate Methylation Cancer Panel I. For each spot, there are a p-value for quility. I want to use limma to analysis the data. How can I set the quility weight for each spot? From the manual of limma, it can be set by read.maimages. But my data is not import by read.maimages. Thanks.

On Thu, Jul 22, 2010 at 5:39 AM, Jinyan Huang <jhuang.ceph@gmail.com> wrote: > Hi all, > My data is from GoldenGate Methylation Cancer Panel I. For each spot, > there are a p-value for quility. I want to use limma to analysis the > data. How can I set the quility weight for each spot? From the manual > of limma, it can be set by read.maimages. But my data is not import by > read.maimages. > > Hi, Jinyan. You'll want to read the help for lmFit(). Sean [[alternative HTML version deleted]]