Is there some packages for RNA-seq data analysis?
1
0
Entering edit mode
Jinyan Huang ▴ 190
@jinyan-huang-4157
Last seen 10.2 years ago
For RNA-seq, illumina/solex data. Thanks.
• 1.2k views
ADD COMMENT
0
Entering edit mode
Ido M. Tamir ▴ 320
@ido-m-tamir-1268
Last seen 10.2 years ago
On Saturday 17 July 2010 00:20:10 Jinyan Huang wrote: > For RNA-seq, illumina/solex data. specifically: http://bioconductor.org/packages/2.6/RNAseq.html and generally: http://bioconductor.org/packages/2.6/HighThroughputSequencing.html I don't know why edgeR is not in the specific list. best, ido
ADD COMMENT
0
Entering edit mode
Genominator, yeastRNASeq, and leeBamViews are additional packages relevant to analysis of RNA-seq experiments -- package developers/maintainers need to consider their choice of biocViews terms; better "tagging" facilities are under consideration to aid resource discovery. On Mon, Jul 19, 2010 at 4:57 AM, Ido M. Tamir <tamir at="" imp.univie.ac.at=""> wrote: > On Saturday 17 July 2010 00:20:10 Jinyan Huang wrote: >> For RNA-seq, illumina/solex data. > > specifically: > http://bioconductor.org/packages/2.6/RNAseq.html > > and generally: > http://bioconductor.org/packages/2.6/HighThroughputSequencing.html > I don't know why edgeR is not in the specific list. > > best, > ido > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
ADD REPLY
0
Entering edit mode
Hi all I have added 'RNAseq' to the biocViews for edgeR, so that it will appear in the RNAseq list when version 1.6.10 reaches biocLite() in 24-36 hours. Thanks Davis On Jul 19, 2010, at 8:23 PM, Vincent Carey wrote: > Genominator, yeastRNASeq, and leeBamViews are additional packages > relevant to analysis of RNA-seq experiments -- package > developers/maintainers need to consider their choice of biocViews > terms; better "tagging" facilities are under consideration to aid > resource discovery. > > On Mon, Jul 19, 2010 at 4:57 AM, Ido M. Tamir <tamir at="" imp.univie.ac.at=""> wrote: >> On Saturday 17 July 2010 00:20:10 Jinyan Huang wrote: >>> For RNA-seq, illumina/solex data. >> >> specifically: >> http://bioconductor.org/packages/2.6/RNAseq.html >> >> and generally: >> http://bioconductor.org/packages/2.6/HighThroughputSequencing.html >> I don't know why edgeR is not in the specific list. >> >> best, >> ido >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ---------------------------------------------------------------------- -- Davis J McCarthy Research Technician Bioinformatics Division Walter and Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville, Vic 3052, Australia dmccarthy at wehi.edu.au http://www.wehi.edu.au ______________________________________________________________________ The information in this email is confidential and intend...{{dropped:6}}
ADD REPLY

Login before adding your answer.

Traffic: 583 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6