Hello , I have checked the mailer list n got to know that some one have asked about the RMA step without summarization so that you could get the probe level data.....have anyone solved it?? If yes please can u let me know which code you used for it...Thak you.. Regards, Sneha. [[alternative HTML version deleted]]

Hi Sneha, sneha patil wrote: > Hello , > > I have checked the mailer list n got to know that some one have asked about > the RMA step without summarization so that you could get the probe level > data.....have anyone solved it?? If yes please can u let me know which code > you used for it...Thak you.. This has been asked and answered many times, so maybe you need better search terms. Anyway, it's very simple. abatch <- ReadAffy() bgcorrected <- bg.correct(abatch, "rma") normalized <- normalize(bgcorrected, "quantiles") Best, Jim > > Regards, > Sneha. > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues