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Timothy Wu
▴
120
@timothy-wu-3964
Last seen 10.3 years ago
Hi,
Is it possible to convert GSE obtained using getGEO() into an MAList?
I tried
> gse = getGEO("GSE17308")
> ma = GDS2MA(gse)
Error in function (classes, fdef, mtable) :
unable to find an inherited method for function "Meta", for
signature
"list"
GSE is not the same as GDS, so it's not surprising that it isn't
working.
However, I don't understand how GSE should be different from GDS to
arrive
to the same data structure. What I ultimately want is to able to
connect to
limma analysis, which in the examples uses an MAList. Any help would
be
appreciated, thank you. :)
Timothy
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