Dear Sean, Thank you very much! I asked our administrator to fixed the mismatch problem and now my program runs good. Thank you again Grace On Fri, Apr 16, 2010 at 5:49 PM, Sean Davis <seandavi@gmail.com> wrote: > > > On Fri, Apr 16, 2010 at 2:35 AM, <sisitzq@gmail.com> wrote: > >> Dear All, >> I am working on large dataset and need much memory. I use our server which >> need qsub -q highmem to run R , but I always have the following problem: >> >> /cluster/apps/x86_64/packages/R-2.10.1/lib64/R/bin/exec/R: error while >> loading shared libraries: libgfortran.so.3: cannot open shared object >> file: >> No such file or directory >> >> I type : grep libgfortran it shows: >> bash: dpkg: command not found >> >> I type: locate libgfortran | grep so It shows: >> /usr/lib/libgfortran.so.1 >> /usr/lib/libgfortran.so.1.0.0 >> /usr/lib/gcc/x86_64-redhat-linux/4.1.1/libgfortran.so >> /usr/lib/gcc/x86_64-redhat-linux/4.1.1/32/libgfortran.so >> /usr/lib64/libgfortran.so.1 >> /usr/lib64/libgfortran.so.1.0.0 >> >> >> when I run R on command line or qsub myjob.sh (no -q highmem), my job runs >> good. >> >> Any one can help me? Thanks >> >> > Hi, Grace. My guess is that the nodes running the highmem queue are > different from the nodes that run the standard queue and that there is a > library mismatch between where R was compiled and where it runs when the > highmem queue is used. You will probably need to talk to your system > administrator. > > Sean > [[alternative HTML version deleted]]