GO.db and org.XX.eg.db: update frequency?
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Julie Zhu ★ 4.3k
@julie-zhu-3596
Last seen 11 months ago
United States
Hi, Gene Ontology (GO) annotation is updated from time to time. I am wondering how often the GO annotation packages such as GO.db and species specific GO annotation packages such as org.Hs.eg.db gets updated? Thank you very much for your kind help! Best regards, Julie ******************************************* Lihua Julie Zhu, Ph.D Research Associate Professor Program in Gene Function and Expression University of Massachusetts Medical School 364 Plantation Street, Room 613 Worcester, MA 01605 508-856-5256 http://www.umassmed.edu/pgfe/faculty/zhu.cfm
Annotation GO Annotation GO • 759 views
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@martin-morgan-1513
Last seen 10 weeks ago
United States
On 03/20/2010 08:07 AM, Zhu, Julie wrote: > Hi, > > Gene Ontology (GO) annotation is updated from time to time. I am wondering > how often the GO annotation packages such as GO.db and species specific GO > annotation packages such as org.Hs.eg.db gets updated? > > Thank you very much for your kind help! Hi Julie -- these are updated once per release, shortly before the release. Actually, these data bases are scheduled to be refreshed in the next week in the devel branch. Do GO() or org.Hs.eg() to find the date stamp of the current packages. Martin > > Best regards, > > Julie > > > ******************************************* > Lihua Julie Zhu, Ph.D > Research Associate Professor > Program in Gene Function and Expression > University of Massachusetts Medical School > 364 Plantation Street, Room 613 > Worcester, MA 01605 > 508-856-5256 > http://www.umassmed.edu/pgfe/faculty/zhu.cfm > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793
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Hi Martin, Thank you very much for the information! Best regards, Julie On 3/20/10 12:17 PM, "Martin Morgan" <mtmorgan@fhcrc.org> wrote: On 03/20/2010 08:07 AM, Zhu, Julie wrote: > Hi, > > Gene Ontology (GO) annotation is updated from time to time. I am wondering > how often the GO annotation packages such as GO.db and species specific GO > annotation packages such as org.Hs.eg.db gets updated? > > Thank you very much for your kind help! Hi Julie -- these are updated once per release, shortly before the release. Actually, these data bases are scheduled to be refreshed in the next week in the devel branch. Do GO() or org.Hs.eg() to find the date stamp of the current packages. Martin > > Best regards, > > Julie > > > ******************************************* > Lihua Julie Zhu, Ph.D > Research Associate Professor > Program in Gene Function and Expression > University of Massachusetts Medical School > 364 Plantation Street, Room 613 > Worcester, MA 01605 > 508-856-5256 > http://www.umassmed.edu/pgfe/faculty/zhu.cfm > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793 [[alternative HTML version deleted]]
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