Dear All We have tiling array data for nucleosome postions done on Agilent Microarray platform with 60mers. Is there any package which can be used for this data analysis? Thanks Hersh [[alternative HTML version deleted]]

Hersh scripsit 17/03/10 12:05: > Dear All > > We have tiling array data for nucleosome postions done on Agilent Microarray > platform with 60mers. Is there any package which can be used for this data > analysis? > > Thanks > Hersh > There are multiple relevant packages, perhaps this article can provide a start: Analyzing ChIP-chip Data Using Bioconductor PLoS Comput Biol. 2008 November; 4(11): e1000227. Joern Toedling* and Wolfgang Huber http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2582686/ Best wishes Wolfgang -- Wolfgang Huber EMBL http://www.embl.de/research/units/genome_biology/huber/contact