Hi, This is probably a naive question but what package would you recommend to identify protein-protein interactions between a list of genes. Something like an annotation package that returns a list of geneIds which have been shown to interact with a supplied geneId would be ideal. Thanks, Fraser [[alternative HTML version deleted]]

Hi dear Fraser, Have a look at RpsiXML package, it is the follow-up package of Rintact which supports more public repositories. Best wishes, David 2010/3/8 Fraser Sim <fjsim@buffalo.edu> > Hi, > > > > This is probably a naive question but what package would you recommend to > identify protein-protein interactions between a list of genes. Something > like an annotation package that returns a list of geneIds which have been > shown to interact with a supplied geneId would be ideal. > > > > Thanks, > > Fraser > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Jitao David Zhang Biological Statistics and Computational Biology Ph.D. Division of Molecular Genome Analysis DKFZ, Heidelberg D-69120, Germany http://www.NextBioMotif.com/ [[alternative HTML version deleted]]