I have some data from 96 well and 384 well plates. Is there some package I could use to view the data in a plate format. Thanks Arunava -- Arunava Chakravartty 13735 Luxor Chase, Fishers,IN 46038 [[alternative HTML version deleted]]

Hi Arunava, Arunava Chakravartty wrote: > I have some data from 96 well and 384 well plates. Is there some package I > could use to view the data in a plate format. That's not a well posed question. What exactly does 'view the data in a plate format' mean? Do you just want to look at the numerical data in a 8X12 or 16X24 matrix or data.frame? Do you want an image where the color or color intensity is an indicator for the underlying data (e.g., a heatmap-type plot)? Something else? Best, Jim > > Thanks > > Arunava > > -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

Thanks for all the response. I just had summary statistic for the data for each of the wells from a 96 well plate. I tried cellHTS and it got me what I wanted. Thanks Arunava On Wed, Feb 3, 2010 at 11:23 AM, Heidi Dvinge <heidi@ebi.ac.uk> wrote: > Hello Arunava, > > I guess that depends on exactly what you're after. If you want some tools > for visualising your data, the I think the package cellHTS deals with > cell-based screens in 384-well plates, and HTqPCR can handle various qPCR > results. There might be other packages out there, but without knowing more > about your data and what you want, it's difficult to say. > > Cheers > \Heidi > > > On 3 Feb 2010, at 15:43, Arunava Chakravartty wrote: > > I have some data from 96 well and 384 well plates. Is there some package I >> could use to view the data in a plate format. >> >> Thanks >> >> Arunava >> >> >> -- >> Arunava Chakravartty >> 13735 Luxor Chase, >> Fishers,IN 46038 >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/ >> gmane.science.biology.informatics.conductor >> > > -- Arunava Chakravartty 13735 Luxor Chase, Fishers,IN 46038 [[alternative HTML version deleted]]

Hello, The function 'plotPlate' of the package 'prada' will do the job. > library('prada') > example(plotPlate) Regards, Greg --- Gregoire Pau EMBL Research officer http://www.ebi.ac.uk/~gpau/ Arunava Chakravartty wrote: > I have some data from 96 well and 384 well plates. Is there some package I > could use to view the data in a plate format. > > Thanks > > Arunava > >

Hello Arunava, I guess that depends on exactly what you're after. If you want some tools for visualising your data, the I think the package cellHTS deals with cell-based screens in 384-well plates, and HTqPCR can handle various qPCR results. There might be other packages out there, but without knowing more about your data and what you want, it's difficult to say. Cheers \Heidi On 3 Feb 2010, at 15:43, Arunava Chakravartty wrote: > I have some data from 96 well and 384 well plates. Is there some > package I > could use to view the data in a plate format. > > Thanks > > Arunava > > > -- > Arunava Chakravartty > 13735 Luxor Chase, > Fishers,IN 46038 > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor