Entering edit mode
Daniel Rico
▴
110
@daniel-rico-2390
Last seen 10.3 years ago
Hello Anguraj,
you can impute missing values before segmentation with preprocessing
functions in snapCGH or CGHcall packages. Check their vignettes.
Best,
Daniel
-----Original Message-----
From: bioconductor-bounces@stat.math.ethz.ch on behalf of Anguraj
Sadanandam
Sent: Thu 1/28/2010 12:57 PM
To: bioc
Subject: [BioC] DNAcopy
Hi,
I think DNAcopy for aCGH segmentation does not allow missing values
in data. That leads to missing probes after segmentation. But I
require all the probes after segmentation.
Any thoughts how I can get DNAcopy to provide all the probes after
segmentation?
Any help will be appreciated.
Thanks,
Anguraj
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