hiii please check out this following error...and let me know where am going wrong.... > outdir = "C:/Users/neurooncolab new pc/Documents/R" > me <- "Wolfgang Huber <w.huber@dkfz.de>" > species <- "Homo_sapiens" > species <- "Homo_sapiens" > makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = "r"), + outdir = outdir, maintainer = me, species = species, version = "0.0.1", + force = TRUE) Importing the data. Creating package in C:/Users/neurooncolab new pc/Documents/R/hgu95av2probe Writing the data. Checking the package. Error in makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = "r"), : Expected but did not find the log-file hgu95av2probe.Rcheck/00check.log after R CMD check In addition: Warning message: closing unused connection 3 (C:/Users/neurooncolab new pc/Documents/R/win-library/2.10/AnnotationDbi/extdata/HG- U95Av2_probe_tab.gz) > sessionInfo() R version 2.10.1 (2009-12-14) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] hgu95av2cdf_2.5.0 affy_1.24.2 matchprobes_1.18.0 Biostrings_2.14.10 [5] IRanges_1.4.10 AnnotationDbi_1.8.1 Biobase_2.6.1 loaded via a namespace (and not attached): [1] affyio_1.14.0 DBI_0.2-5 preprocessCore_1.8.0 RSQLite_0.8-1 [5] tools_2.10.1 > traceback() 2: stop(paste("Expected but did not find the log-file", logFile, "after R CMD check")) 1: makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = "r"), outdir = outdir, maintainer = me, species = species, version = "0.0.1", force = TRUE) [[alternative HTML version deleted]]

Hi Sneha, sneha patil wrote: > hiii > > please check out this following error...and let me know where am going > wrong.... > > > >> outdir = "C:/Users/neurooncolab new pc/Documents/R" >> me <- "Wolfgang Huber <w.huber at="" dkfz.de="">" >> species <- "Homo_sapiens" >> species <- "Homo_sapiens" >> makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = "r"), > + outdir = outdir, maintainer = me, species = species, version = "0.0.1", > + force = TRUE) > Importing the data. > Creating package in C:/Users/neurooncolab new pc/Documents/R/hgu95av2probe > Writing the data. > Checking the package. > Error in makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = > "r"), : > Expected but did not find the log-file hgu95av2probe.Rcheck/00check.log > after R CMD check > In addition: Warning message: > closing unused connection 3 (C:/Users/neurooncolab new > pc/Documents/R/win-library/2.10/AnnotationDbi/extdata/HG- U95Av2_probe_tab.gz) I would add check = FALSE and build = FALSE to your makeProbePackage() call. Then just do R CMD build and R CMD check separately. This makes the assumption that you are set up to build/install packages. If not, see here: http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Can-I-install- packages-into-libraries-in-this-version_003f Best, Jim > >> sessionInfo() > R version 2.10.1 (2009-12-14) > i386-pc-mingw32 > locale: > [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United > States.1252 > [3] LC_MONETARY=English_United States.1252 > LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > attached base packages: > [1] stats graphics grDevices utils datasets methods base > other attached packages: > [1] hgu95av2cdf_2.5.0 affy_1.24.2 matchprobes_1.18.0 > Biostrings_2.14.10 > [5] IRanges_1.4.10 AnnotationDbi_1.8.1 Biobase_2.6.1 > loaded via a namespace (and not attached): > [1] affyio_1.14.0 DBI_0.2-5 preprocessCore_1.8.0 > RSQLite_0.8-1 > [5] tools_2.10.1 > > >> traceback() > 2: stop(paste("Expected but did not find the log-file", logFile, > "after R CMD check")) > 1: makeProbePackage("HG-U95Av2", datafile = gzfile(filename, open = "r"), > outdir = outdir, maintainer = me, species = species, version = > "0.0.1", > force = TRUE) > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues