Hi When reading data into an marrayRaw object, what is the correct slot to put details about spot flags into? How is this achieved using read.marrayRaw? Thanks Mick

Hi Michael, You can put the flagged info in the slot "maW". YOu specify the argument name.W e.g. read.GenePix(fnames="test.gpr", name.W="Flags") where Flags is the column name in the gpr file. Cheers Jean ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Jean Yee Hwa Yang jean@biostat.ucsf.edu Division of Biostatistics, Tel: (415) 476-3368 University of California, Fax: (415) 476-6014 500 Parnassus Avenue, MU 420-W, San Francisco, CA 94143-0560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ On Tue, 25 Nov 2003, michael watson (IAH-C) wrote: > Hi > > When reading data into an marrayRaw object, what is the correct slot > to put details about spot flags into? How is this achieved using > read.marrayRaw? > > Thanks > Mick > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor >