Entering edit mode
Yair Benita
▴
80
@yair-benita-1978
Last seen 10.2 years ago
Hi All,
I am a fan of the brainarray customCDF and now routinely normalize my
Affy
files with these CDFs. I find the annotation much more reliable than
Affy's.
I typically use GCRMA after reading the CEL files.
On the mac I install these customCDFs manually from source. GCRMA has
the
ability to fetch the CDFs when it cannot find them. However, it gives
the
same error that the brainarray repository cannot be found. I wonder if
we
can fix it somehow. I can't find the location where gcrma stores this
link.
Ideally I would like it to go to the correct link (
http://brainarray.mbni.med.umich.edu/bioc/) and install the customCDFs
from
source. Is there a way to do this?
Thanks,
Yair