Hello everyone, We have identified different regions of transcription factor. We have strand, start and end position of these motifs in IRanges object. I would like to find the TSSs near my transcription factor. I am wondering if anyone knows a method or a package to find them. I have heard about the GenomeFeatures package, anybody know if is the best methods ? Thanks, Arnaud

Hi Arnaud, The function annotatePeakInBatch in ChIPpeakAnno package will do. Julie On 12/10/09 2:58 PM, "Droit Arnaud" <arnaud.droit at="" ircm.qc.ca=""> wrote: > Hello everyone, > We have identified different regions of transcription factor. We have strand, > start and end position of these motifs in IRanges object. > I would like to find the TSSs near my transcription factor. I am wondering if > anyone knows a method or a package to find them. > I have heard about the GenomeFeatures package, anybody know if is the best > methods ? > Thanks, > Arnaud > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >