Dear all: I got a GO_ID, such as "GO:0042989" from the commend below: > gg <- getGO(rownames(data.dat), data="YEAST") However, the GO_ID cannot be matched by AmiGo database. http://www.godatabase.org/cgi- bin/go.cgi?query=GO%3A0042989&view=query&sessi on_id=93871069092363&action=query&search_constraint=terms As a result, I got an error massage here, > get("GO:0042989", env = GOCATEGORY) > Error in get(x, envir, mode, inherits) : variable "GO:0042989" was not found How can I avoid this inconsistent annotation between "getGO()" and "getGO()"? Thank you for the help. Shih-Te ------------------------------------------------ Shih-Te Yang, Ph.D. student Bioinformatics Research Center Institute of Biochemistry School of Life Science National Yang-Ming University Tel:+886-2-28267000*5666 Fax:+886-2-81461062 E-mail:g38903040@ym.edu.tw MyWeb: http://binfo.ym.edu.tw/styang/

>I got a GO_ID, such as "GO:0042989" from the commend below: >> gg <- getGO(rownames(data.dat), data="YEAST") What are the values for rownames(data.dat)? We can not test the code if you do not tell us what rownames(data.dat) were. > >However, the GO_ID cannot be matched by AmiGo database. >http://www.godatabase.org/cgi- bin/go.cgi?query=GO%3A0042989&view=query&sessi >on_id=93871069092363&action=query&search_constraint=terms > >As a result, I got an error massage here, >> get("GO:0042989", env = GOCATEGORY) >> Error in get(x, envir, mode, inherits) : variable "GO:0042989" was not >found > >How can I avoid this inconsistent annotation between "getGO()" and >"getGO()"? > >Thank you for the help. > >Shih-Te >------------------------------------------------ >Shih-Te Yang, Ph.D. student >Bioinformatics Research Center >Institute of Biochemistry >School of Life Science >National Yang-Ming University >Tel:+886-2-28267000*5666 >Fax:+886-2-81461062 >E-mail:g38903040@ym.edu.tw >MyWeb: http://binfo.ym.edu.tw/styang/ > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084