Hi all, We present a new R package DEGseq for identifying differentially expressed genes from RNA-seq data.The input of DEGseq is uniquely mapped reads from RNA-seq data with a gene annotation of the corresponding genome, or gene (or transcript isoform) expression values provided by other programs. The output of DEGseq includes a text file and an XHTML summary page. The text file contains the expression values for the samples, a P-value and two kinds of Q-values for each gene to denote its expression difference between libraries. Two novel MA-plot based methods along with some existing methods have been integrated into it. You may access it through the commands: > source("http://bioconductor.org/biocLite.R") # R >= 2.10.0 > biocLite("DEGseq") Comments, questions, etc, are all welcome. Best regards Likun [[alternative HTML version deleted]]