Hello, I am having difficulty with the installation of flowClust on Solaris Nevada (SXCE build 121) and R 2.9.2. All are built with similar command line arguments in 64-bit. Any help will be greatly appreciated! Thanks in advance. I receive the following error upon loading flowClust: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/opt/R/lib/R/library/flowClust/libs/flowClust.so': ld.so.1: R: fatal: relocation error: file /opt/R/lib/R/library/flowClust/libs/flowClust.so: symbol gsl_root_fsolver_brent: referenced symbol not found ============ It appears that it is not linking properly? My gsl installation is in /opt/local and I appear to have been able to install gsl R package OK: require(gsl) Loading required package: gsl Attaching package: 'gsl' The following object(s) are masked from package:stats : sd ============= /opt/local is in my ld.config path: Configuration file [version 4]: /var/ld/ld.config Platform: 32-bit LSB 80386 Default Library Path (ELF): /lib:/usr/lib:/opt/local/lib Trusted Directories (ELF): /lib/secure:/usr/lib/secure (system default) ============= I have tried various combinations of the following in an attempt to get flowClust to install properly: ./R CMD INSTALL --configure-args="CC='/opt/sunstudio12.1/bin/cc -m64' CPPFLAGS='-I/usr/gnu/include -I/opt/local/include -I/usr/include -I/ usr/sfw/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include' CFLAGS='-xO5 -xc99 -xlibmieee -xlibmil -nofstore' LDFLAGS='-L/opt/local/lib -L/usr/gnu/lib -L/usr/sfw/lib/amd64 -L/usr/lib/amd64 -L/usr/lib -R/usr/sfw/lib/amd64 -R/usr/lib/amd64 -R/usr/lib -R/usr/gnu/lib -R/opt/local/lib' LIBS='-L/opt/local/lib' LD_LIBRARY_PATH=/opt/local/lib:$LD_LIBRARY_PATH" ~/downloads/flowClust Loading required package: fortunes * Installing to library '/export/pei/src/R-2.9.2/library' * Installing *source* package 'flowClust' ... checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs /opt/sunstudio12.1/bin/cc -m64 -I/export/pei/src/R-2.9.2/include -I/usr/gnu/include -I/opt/local/include -I/usr/include -I/usr/sfw/include -I/usr/postgres/8.3/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include -R/usr/postgres/8.3/include -KPIC -xO5 -xc99 -xlibmieee -xlibmil -nofstore -c BoxCox.c -o BoxCox.o /opt/sunstudio12.1/bin/cc -m64 -I/export/pei/src/R-2.9.2/include -I/usr/gnu/include -I/opt/local/include -I/usr/include -I/usr/sfw/include -I/usr/postgres/8.3/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include -R/usr/postgres/8.3/include -KPIC -xO5 -xc99 -xlibmieee -xlibmil -nofstore -c Nu.c -o Nu.o /opt/sunstudio12.1/bin/cc -m64 -I/export/pei/src/R-2.9.2/include -I/usr/gnu/include -I/opt/local/include -I/usr/include -I/usr/sfw/include -I/usr/postgres/8.3/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include -R/usr/postgres/8.3/include -KPIC -xO5 -xc99 -xlibmieee -xlibmil -nofstore -c flowClust.c -o flowClust.o /opt/sunstudio12.1/bin/cc -m64 -I/export/pei/src/R-2.9.2/include -I/usr/gnu/include -I/opt/local/include -I/usr/include -I/usr/sfw/include -I/usr/postgres/8.3/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include -R/usr/postgres/8.3/include -KPIC -xO5 -xc99 -xlibmieee -xlibmil -nofstore -c flowClustGaussian.c -o flowClustGaussian.o /opt/sunstudio12.1/bin/cc -m64 -I/export/pei/src/R-2.9.2/include -I/usr/gnu/include -I/opt/local/include -I/usr/include -I/usr/sfw/include -I/usr/postgres/8.3/include -R/usr/gnu/include -R/usr/include -R/usr/sfw/include -R/opt/local/include -R/usr/postgres/8.3/include -KPIC -xO5 -xc99 -xlibmieee -xlibmil -nofstore -c ranMVNT.c -o ranMVNT.o /opt/sunstudio12.1/bin/cc -m64 -G -L/usr/gnu/lib -L/usr/sfw/lib/amd64 -L/usr/lib/amd64 -L/opt/local/lib -L/opt/local/lib/amd64 -L/usr/lib -L/usr/postgres/8.3/lib -R/usr/sfw/lib/amd64 -R/usr/lib/amd64 -R/usr/lib -R/usr/gnu/lib -R/opt/local/lib -R/opt/local/lib/amd64 -R/usr/postgres/8.3/lib -o flowClust.so BoxCox.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o ** R ** data ** inst ** preparing package for lazy loading by using mclust, you accept the license agreement in the LICENSE file and at http://www.stat.washington.edu/mclust/license.txt Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: rrcov Loading required package: robustbase Loading required package: pcaPP Loading required package: mvtnorm pcaPP 0.1-1 loaded Scalable Robust Estimators with High Breakdown Point (version 0.5-02) Attaching package: 'flowCore' The following object(s) are masked from package:stats : alias, filter Warning in .findOrCopyClass(class2, classDef2, where, "subclass") : Class "Ulist" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported? Making a copy in package "flowClust" Warning in .findOrCopyClass(class2, classDef2, where, "subclass") : Class "Uvector" is defined (with package slot "rrcov") but no metadata object found to revise subclass information---not exported? Making a copy in package "flowClust" ** help *** installing help indices >>> Building/Updating help pages for package 'flowClust' Formats: text html latex example ** building package indices ... * DONE (flowClust)