Entering edit mode
Michal Blazejczyk
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320
@michal-blazejczyk-2231
Last seen 10.3 years ago
Hi,
We have custom code that creates LumiBatch objects from data.
First, we create an AnnotatedDataFrame for both phenoData and
featureData. Then we create the LumiBatch this way:
lumiBatch <- new( "LumiBatch", exprs = signalRaw, se.exprs =
beadSD,
featureData = featureData, phenoData = phenoData )
In R 2.9.2 we are getting the following error message:
error in sample names<= tmp value = c (sample 1 sample 2 sample 3)
value length (8) must equal sample number in assay data (0).
I have a question for lumi developers, were there changes in the most
recent version of the lumi package that would make such code stop
working?
I can send the entire script, but I thought that maybe it isn't
necessary (in the case when this is a known change in behavior).
Here's the sessionInfo():
R version 2.9.2 (2009-08-24)
i386-pc-mingw32
locale:
LC_COLLATE=English_Canada.1252;LC_CTYPE=English_Canada.1252;LC_MONETAR
Y=English_Canada.1252;LC_NUMERIC=C;LC_TIME=English_Canada.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumi_1.10.2 RSQLite_0.7-2 DBI_0.2-4
[4] preprocessCore_1.6.0 mgcv_1.5-5 affy_1.22.1
[7] annotate_1.22.0 AnnotationDbi_1.6.1 Biobase_2.4.1
loaded via a namespace (and not attached):
[1] affyio_1.12.0 grid_2.9.2 lattice_0.17-25 nlme_3.1-93
[5] tools_2.9.2 xtable_1.5-5
Best,
Michal