Ensembl mart release 56: Useful information
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@rhoda-kinsella-3200
Last seen 10.2 years ago
Hi, The new Ensembl marts for release 56 are now live on www.ensembl.org and www.biomart.org. The following improvements and modifications have been made: Mart Builds (all species) Ensembl mart 56 * Addition of new species Callithrix jacchus (Marmoset) and Sus scrofa (Pig) * Drosophila melanogaster is now on assembly BDGP 5.13 * Re-addition of % identity information from compara as well as addition of the tag and value information from the protein_tree_tag table (Bootstrap score and duplication_confidence_score). * Addition of GO Slim information * Addition of new "Transcript Event" attribute page containing information from the splice_event table * Addition of Eukaryotic Promoter Database (EPD), The G protein- coupled Receptor Database (GPCR) and TransFac filters and attributes for Drosophila melanogaster * Removal of Anopheles gambiae and Aedes aegypti as these species are now in the Ensembl Genomes Marts (http://metazoa.ensembl.org/) Vega mart 36 * Addition of RefSeq Genomic filters and attributes Ensembl variation mart 56 * Removal of Ensembl Celera, TSC and HGVBase information * Human now on dbSNP 130 Ensembl Functional Genomics mart 56 * Addition of external reference attributes (Gene references) for the External Features Regards, Rhoda Rhoda Kinsella Ph.D. Ensembl Bioinformatician, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton Cambridge CB10 1SD, UK. [[alternative HTML version deleted]]
GO Anopheles gambiae Drosophila melanogaster genomes GO Anopheles gambiae genomes • 1.2k views
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