Dear Jim, That was beautiful. Thanks! Priscila On Fri, Sep 4, 2009 at 3:18 PM, James W. MacDonald <jmacdon@med.umich.edu>wrote: > a <- heatmap(as.matrix(mtcars)) > > rev(row.names(mtcars)[a$rowInd]) > [1] "Toyota Corona" "Porsche 914-2" "Datsun 710" > [4] "Volvo 142E" "Merc 230" "Lotus Europa" > [7] "Merc 280" "Merc 280C" "Mazda RX4 Wag" > [10] "Mazda RX4" "Merc 240D" "Ferrari Dino" > [13] "Fiat 128" "Fiat X1-9" "Toyota Corolla" > [16] "Honda Civic" "Merc 450SL" "Merc 450SE" > [19] "Merc 450SLC" "Dodge Challenger" "AMC Javelin" > [22] "Hornet 4 Drive" "Valiant" "Duster 360" > [25] "Camaro Z28" "Ford Pantera L" "Pontiac Firebird" > [28] "Hornet Sportabout" "Cadillac Fleetwood" "Lincoln Continental" > [31] "Chrysler Imperial" "Maserati Bora" > > Best, > > Jim > > > > Priscila Grynberg wrote: > >> Dear BioCs, >> I'd like to know how can I obtain the list of genes in the same order as >> heatmap clustered them. I used heatmap() function. And I can't read the >> row >> names. >> >> I read about RowInd and order.dendrogram(), but with no success at all. >> >> Thanks. >> >> >> >> ------------------------------------------------------------------- ----- >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- > James W. MacDonald, M.S. > Biostatistician > Douglas Lab > University of Michigan > Department of Human Genetics > 5912 Buhl > 1241 E. Catherine St. > Ann Arbor MI 48109-5618 > 734-615-7826 > -- Priscila Grynberg, B.Sc., M.Sc. Doutoranda em Bioinformática (Bioinformatics D.Sc student) Laboratório de Genética Bioquímica Universidade Federal de Minas Gerais Tel: +55 31 3409-2628 CV: http://lattes.cnpq.br/8808643075395963 [[alternative HTML version deleted]]