Dear all, Does anyone have a CDF package of the Barley1 Chip for R for Windows? Or can someone please create one or help me creating one. The original CDF file can be obtained at http://www.affymetrix.com/support/technical/byproduct.affx?product=bar ley1 or from me. Regards, Ute Baumann ---- Dr Ute Baumann Australian Centre for Plant Functional Genomics The University of Adelaide PMB 1 Waite Campus Glen Osmond 5064 The University's obligatory Email-disclaimer can be found at http://www.adelaide.edu.au/ITS/email_disclaimer/signature.txt

In order to create this cdfenv, you will need to peruse the instructions for building packages under windows (I have to assume you are on win32), which can be found in the R for Windows FAQ, question 3.1. Although relatively straightforward to do, getting your win32 box set up for compiling packages can be a frustrating experience. If you choose to do so, make sure you follow the instructions on Brian Ripley's site EXACTLY. The instructions are terse, but everything you need to know is there. You will need to compile makecdfenv because there isn't a compiled package yet, and once you have made the cdfenv, you will need to run RCMD INSTALL to install it. This could easily take a while for you to do if you are not well versed with computers, so in the interim I am sending you the envs directly. However, I would highly recommend you take the time to be able to compile your own packages. It has made my life much easier. BioCore: I can contribute the envs if there is an interest. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "U. Baumann" <ute.baumann@adelaide.edu.au> 11/02/03 11:22PM >>> Dear all, Does anyone have a CDF package of the Barley1 Chip for R for Windows? Or can someone please create one or help me creating one. The original CDF file can be obtained at http://www.affymetrix.com/support/technical/byproduct.affx?product=bar ley1 or from me. Regards, Ute Baumann ---- Dr Ute Baumann Australian Centre for Plant Functional Genomics The University of Adelaide PMB 1 Waite Campus Glen Osmond 5064 The University's obligatory Email-disclaimer can be found at http://www.adelaide.edu.au/ITS/email_disclaimer/signature.txt _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor

Hello: I made it for Windows, plus Linux. For windows version, you may get it at: http://barleypop.vrac.iastate.edu/BarleyBase/testls/rpackage/barley1cd f.zip Installation need some other tools: For windows, you need to get tools from: http://www.stats.ox.ac.uk/pub/Rtools/tools.zip (sources), which is under http://www.stats.ox.ac.uk/pub/Rtools/ 1. Get the tools, and unzip it to the ...R\bin\ directory 2 .Unzip the barley1cdf.zip to a directory, i.e. c:\barley1cdf 3. Under command line cd to ..R\bin\ directory, run: RCMD INSTALL --docs=normal c:\barley1cdf This works under WinXP and Win2K for me. Please have a look at BarleyBase, http://barleypop.vrac.iastate.edu/BarleyBase/, the microarray database dedicated to Barley1 GeneChip data. Lishuang Shen BarleyBase Iowa State University Ames, Iowa 50010 Tel: (515)-294-8479 (Office) Email: lshen@iastate.edu ------------------------------------------------------- Message: 3 Date: Mon, 03 Nov 2003 10:27:08 -0500 From: "James MacDonald" <jmacdon@med.umich.edu> Subject: Re: [BioC] CDF package needed for Barley chip To: <ute.baumann@adelaide.edu.au>, <bioconductor@stat.math.ethz.ch> Message-ID: <sfa62d96.090@med-gwia-02a.med.umich.edu> Content-Type: text/plain; charset=US-ASCII In order to create this cdfenv, you will need to peruse the instructions for building packages under windows (I have to assume you are on win32), which can be found in the R for Windows FAQ, question 3.1. Although relatively straightforward to do, getting your win32 box set up for compiling packages can be a frustrating experience. If you choose to do so, make sure you follow the instructions on Brian Ripley's site EXACTLY. The instructions are terse, but everything you need to know is there. You will need to compile makecdfenv because there isn't a compiled package yet, and once you have made the cdfenv, you will need to run RCMD INSTALL to install it. This could easily take a while for you to do if you are not well versed with computers, so in the interim I am sending you the envs directly. However, I would highly recommend you take the time to be able to compile your own packages. It has made my life much easier. BioCore: I can contribute the envs if there is an interest. Best, Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> "U. Baumann" <ute.baumann@adelaide.edu.au> 11/02/03 11:22PM >>> Dear all, Does anyone have a CDF package of the Barley1 Chip for R for Windows? Or can someone please create one or help me creating one. The original CDF file can be obtained at http://www.affymetrix.com/support/technical/byproduct.affx?product=bar ley1 or from me. Regards, Ute Baumann ---- Dr Ute Baumann Australian Centre for Plant Functional Genomics The University of Adelaide PMB 1 Waite Campus Glen Osmond 5064