Hi, The examples in "Bioinformatics and Computational Biology Solutions Using R and Bioconductor" are outdated. For example, I don't find the package "GO" in http://www.bioconductor.org/mogr/chapter-code/metaOverview.R I'm wondering if somebody can help updated the examples to reflect the changes in BioC in the last 4 years. Regards, Peng

Hi Peng, in general, all the annotation package now have an ".db" ending to reflect an underlying change to a database structure. In this particular case you'd therefore want GO.db, but the same would apply to e.g. KEGG.db, and all the chip annotation packages (moe430a.db, hgu133a.db, mogene10stprobeset.db etc.). Please see http://www.bioconductor.org/packages/release/AnnotationData.html for all the annotation packages. Best \Heidi > Hi, > > The examples in "Bioinformatics and Computational Biology Solutions > Using R and Bioconductor" are outdated. For example, I don't find the > package "GO" in > http://www.bioconductor.org/mogr/chapter-code/metaOverview.R > > I'm wondering if somebody can help updated the examples to reflect the > changes in BioC in the last 4 years. > > Regards, > Peng > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >