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mauede@alice.it
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@mauedealiceit-3511
Last seen 10.2 years ago
I think I found myself the answer ... but I would apprecaite your
confirmation.
I guess the identifier "NM_xxxx", called Gene_Bank_Accession_Number by
miRDB community, can be retrieved from BioMart using the filter
"refseq_dna".
Am I right ?
Thank you for your patience,
Maura
-----Messaggio originale-----
Da: bioconductor-bounces@stat.math.ethz.ch per conto di
mauede@alice.it
Inviato: lun 27/07/2009 13.40
A: Bioconductor List
Oggetto: [BioC] Gene_Bank_Access_Number
Please, do you know whether there exists any mart attributes, for homo
sapiens dataset, that corresponds to what is recorded on miRDB and
called Gene_Bank_Access_Number ?
For example, many such records can be found in file
"MirTarget2_v3.0_prediction_result.txt.gz" downloadable from miRDB
(http://mirdb.org/miRDB/download.html)
In the following I have pasted some records. I am interested in the
"NM_xxxxxx" identifier
hsa-let-7a NM_024639 52.7097
hsa-let-7a NM_001017989 58.7888648495
hsa-let-7a NM_203331 67.1661111958
hsa-let-7a NM_001879 69.228165244
hsa-let-7a NM_000090 60.4178
hsa-let-7a NM_018273 75.9952
hsa-let-7a NM_001127226 67.1661111958
Thank you very much in advance,
Maura
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