Hi everyone.
When I load the library VSN I have a error.
Any tip is very appreciated.
> library(vsn)
Error in bindingIsLocked(m2, where) : not an environment
Error in firstlib(which.lib.loc, package) :
Cannot load without package "Biobase"
Error in library(vsn) : .First.lib failed
> library(Biobase)
Error in bindingIsLocked(m2, where) : not an environment
Error in library(Biobase) : .First.lib failed
>
I use R 1.8.0
Marcelo Luiz de Laia, M.Sc.
Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular
Universidade Estadual Paulista - UNESP
Via de Acesso Prof. Paulo Donato Castelane, Km 05
14.884-900 - Jaboticabal, SP, Brazil
PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.)
Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com
---
You need to upgrade to the devel versions of BioC if you are using
R-1.8.0
HTH,
Jim
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
>>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM >>>
Hi everyone.
When I load the library VSN I have a error.
Any tip is very appreciated.
> library(vsn)
Error in bindingIsLocked(m2, where) : not an environment
Error in firstlib(which.lib.loc, package) :
Cannot load without package "Biobase"
Error in library(vsn) : .First.lib failed
> library(Biobase)
Error in bindingIsLocked(m2, where) : not an environment
Error in library(Biobase) : .First.lib failed
>
I use R 1.8.0
Marcelo Luiz de Laia, M.Sc.
Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular
Universidade Estadual Paulista - UNESP
Via de Acesso Prof. Paulo Donato Castelane, Km 05
14.884-900 - Jaboticabal, SP, Brazil
PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.)
Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com
---
_______________________________________________
Bioconductor mailing list
Bioconductor@stat.math.ethz.ch
https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
Hi Marcelo,
which version of bioconductor are you using? With R 1.8.0, you need
the
most recent development version of Biobase etc. Or, with release 1.2,
you
have to use R 1.7.1.
Btw, bioC release 1.3 is imminent - what is presently the development
version will +/- last-minite updates become the release 1.3
Best wishes
Wolfgang
-------------------------------------
Wolfgang Huber
Division of Molecular Genome Analysis
German Cancer Research Center
Heidelberg, Germany
Phone: +49 6221 424709
Fax: +49 6221 42524709
Http: www.dkfz.de/abt0840/whuber
-------------------------------------
On Wed, 29 Oct 2003, Marcelo Luiz de Laia wrote:
> Hi everyone.
>
> When I load the library VSN I have a error.
>
> Any tip is very appreciated.
>
> > library(vsn)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in firstlib(which.lib.loc, package) :
> Cannot load without package "Biobase"
> Error in library(vsn) : .First.lib failed
> > library(Biobase)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in library(Biobase) : .First.lib failed
> >
Dear MacDonald, Dear Huber and Dear All,
I upgrade R from version 1.7.1 to 1.8.0 in a few days a go.
I was learnning limma (to analyses my microarray data) and to day I
decide
learnning about VSN (to analyses my macroarray data).
Can you send me a instructions for automatic upgrade to devel mode in
windows?
Thanks a lot
Marcelo
> -----Original Message-----
> From: James MacDonald [mailto:jmacdon@med.umich.edu]
> Sent: quarta-feira, 29 de outubro de 2003 14:30
> To: mlaia@fcav.unesp.br; bioconductor@stat.math.ethz.ch
> Subject: Re: [BioC] Error in load VSN library
>
>
> You need to upgrade to the devel versions of BioC if you are using
R-1.8.0
>
> HTH,
>
> Jim
>
>
>
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
>
> >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM
>>>
> Hi everyone.
>
> When I load the library VSN I have a error.
>
> Any tip is very appreciated.
>
> > library(vsn)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in firstlib(which.lib.loc, package) :
> Cannot load without package "Biobase"
> Error in library(vsn) : .First.lib failed
> > library(Biobase)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in library(Biobase) : .First.lib failed
> >
>
> I use R 1.8.0
>
> Marcelo Luiz de Laia, M.Sc.
> Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular
> Universidade Estadual Paulista - UNESP
> Via de Acesso Prof. Paulo Donato Castelane, Km 05
> 14.884-900 - Jaboticabal, SP, Brazil
> PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.)
> Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com
> ---
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
>
>
> ---
> Incoming mail is certified Virus Free.
> Checked by AVG anti-virus system (http://www.grisoft.com).
> Version: 6.0.532 / Virus Database: 326 - Release Date: 27/10/2003
>
---
source("http://www.bioconductor.org/getBioC.R")
getBioC(relLevel="devel")
Jim
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
>>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:54AM >>>
Dear MacDonald, Dear Huber and Dear All,
I upgrade R from version 1.7.1 to 1.8.0 in a few days a go.
I was learnning limma (to analyses my microarray data) and to day I
decide
learnning about VSN (to analyses my macroarray data).
Can you send me a instructions for automatic upgrade to devel mode in
windows?
Thanks a lot
Marcelo
> -----Original Message-----
> From: James MacDonald [mailto:jmacdon@med.umich.edu]
> Sent: quarta-feira, 29 de outubro de 2003 14:30
> To: mlaia@fcav.unesp.br; bioconductor@stat.math.ethz.ch
> Subject: Re: [BioC] Error in load VSN library
>
>
> You need to upgrade to the devel versions of BioC if you are using
R-1.8.0
>
> HTH,
>
> Jim
>
>
>
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
>
> >>> "Marcelo Luiz de Laia" <mlaia@fcav.unesp.br> 10/29/03 11:30AM
>>>
> Hi everyone.
>
> When I load the library VSN I have a error.
>
> Any tip is very appreciated.
>
> > library(vsn)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in firstlib(which.lib.loc, package) :
> Cannot load without package "Biobase"
> Error in library(vsn) : .First.lib failed
> > library(Biobase)
> Error in bindingIsLocked(m2, where) : not an environment
> Error in library(Biobase) : .First.lib failed
> >
>
> I use R 1.8.0
>
> Marcelo Luiz de Laia, M.Sc.
> Dep. de Tecnologia, Lab. Bioqu?mica e de Biologia Molecular
> Universidade Estadual Paulista - UNESP
> Via de Acesso Prof. Paulo Donato Castelane, Km 05
> 14.884-900 - Jaboticabal, SP, Brazil
> PhoneFax: 16 3209-2675/2676/2677 R. 202/208/203 (trab.)
> Phone res: 16 3203 2328 - www.lbm.fcav.unesp.br - mlaia@yahoo.com
> ---
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor@stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
>
>
> ---
> Incoming mail is certified Virus Free.
> Checked by AVG anti-virus system (http://www.grisoft.com).
> Version: 6.0.532 / Virus Database: 326 - Release Date: 27/10/2003
>
---
