Warning serious?
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Loren Engrav ★ 1.0k
@loren-engrav-2040
Last seen 10.2 years ago
I recently finished a project with maanova package Many warnings of In any(parsed.formula$random) : coercing argument of type 'double' to logical Is this serious? Or just ignore? Recently queried on BioC but I could not find an answer Thank you [[alternative HTML version deleted]]
maanova maanova • 1.2k views
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 3.6 years ago
United States
Sorry I do not know the answer to your question. However, please repost with a header like "maanova warning message". The subject sounded like spam and I almost trashed your message without reading it. --Naomi At 11:06 PM 7/9/2009, Loren Engrav wrote: >I recently finished a project with maanova package >Many warnings of >In any(parsed.formula$random) : coercing argument of type 'double' to >logical >Is this serious? Or just ignore? > >Recently queried on BioC but I could not find an answer > >Thank you > > [[alternative HTML version deleted]] > >_______________________________________________ >Bioconductor mailing list >Bioconductor at stat.math.ethz.ch >https://stat.ethz.ch/mailman/listinfo/bioconductor >Search the archives: >http://news.gmane.org/gmane.science.biology.informatics.conductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
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Ok, will repost with new header > From: Naomi Altman <naomi at="" stat.psu.edu=""> > Date: Fri, 10 Jul 2009 09:06:51 -0400 > To: Loren Engrav <engrav at="" u.washington.edu="">, "bioconductor at stat.math.ethz.ch" > <bioconductor at="" stat.math.ethz.ch=""> > Subject: Re: [BioC] Warning serious? > > Sorry I do not know the answer to your question. > > However, please repost with a header like "maanova warning message". > The subject sounded like spam and I almost trashed your message > without reading it. > > --Naomi > > At 11:06 PM 7/9/2009, Loren Engrav wrote: >> I recently finished a project with maanova package >> Many warnings of >> In any(parsed.formula$random) : coercing argument of type 'double' to >> logical >> Is this serious? Or just ignore? >> >> Recently queried on BioC but I could not find an answer >> >> Thank you >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > Naomi S. Altman 814-865-3791 (voice) > Associate Professor > Dept. of Statistics 814-863-7114 (fax) > Penn State University 814-865-1348 (Statistics) > University Park, PA 16802-2111 >
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@juan-pedro-steibel-1533
Last seen 10.2 years ago
Hello, I remember seeing that warning before (we use maanova a lot for affy and for 2-color platforms) but I can't find any notes on it. So not completely sure what the implications were. If you could provide a reproducible example (full incidence file, short expression file: full column range, but only 10 genes ~rows~ or so) and code, I would be glad to look at it. Also, it would help if you can post your session info. Maanova has undergone some retooling in the past months. Thanks Juan Pedro Loren Engrav wrote: > I recently finished a project with maanova package > Many warnings of > In any(parsed.formula$random) : coercing argument of type 'double' to > logical > Is this serious? Or just ignore? > > Recently queried on BioC but I could not find an answer > > Thank you > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > > -- ============================= Juan Pedro Steibel Assistant Professor Statistical Genetics and Genomics Department of Animal Science & Department of Fisheries and Wildlife Michigan State University 1205-I Anthony Hall East Lansing, MI 48824 USA Phone: 1-517-353-5102 E-mail: steibelj at msu.edu
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