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john seers IFR
▴
810
@john-seers-ifr-1605
Last seen 10.2 years ago
Hi All
Just a warning to other people who might be about to update and I am
not
sure how to guard against this sort of problem. How are bioconductor
and
CRAN coordinated? I updated my version of XML (from CRAN) and had some
problems using biomaRt.
On issuing library(bioMart) I got a message saying that iconv.dll
could
not be downloaded and reinstalling the application might fix the
problem. Also shown were messages about unable to load XML or the
biomaRt namespace.
I re-installed XML from bioconductor and it all worked again.
My sessionInfo() below is the version that is working, not the problem
configuration.
Regards
John Seers
> sessionInfo()
R version 2.9.0 (2009-04-17)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] biomaRt_2.0.0 RWinEdt_1.8-1
loaded via a namespace (and not attached):
[1] RCurl_0.97-3 tools_2.9.0 XML_2.3-0
>