Entering edit mode
Michael P Shipway
▴
60
@michael-p-shipway-3459
Last seen 10.4 years ago
I am trying to install and use RWebServices on a system running CentOS
5 (Linux).
I've installed all the prerequisites, including the optional ones.
I've created a simple R package to test the setup
which takes a single numeric parameter and returns a canned text
string.
I am hung up on step 4.2 of the ?Enabling R packages for web or grid
services?
vignette document, which builds a web service server.
One of the java code files which was autogenerated by an earlier step
implements
a java class which does not exist
(org.bioconductor.rserviceJms.services.helloWorld.HelloWorld_PortType
).
It appears that this class should also have been autogenerated,
but I am unable to determine where this should have happened.
Can anyone suggest what I may be doing wrong?
Here is the execution and error output:
????????????????-
[icmdev at localhost helloWorld]$ sudo ant mkserver
Password:
Buildfile: build.xml
mkserver:
mkserver-jms:
[delete] Deleting directory /tmp/helloWorld/server
[mkdir] Created dir: /tmp/helloWorld/server/lib
[copy] Copying 10 files to /tmp/helloWorld/server/lib
make-service-server-jms:
[echo] for service: helloWorld
[mkdir] Created dir: /tmp/helloWorld/server/helloWorld/src
[mkdir] Created dir: /tmp/helloWorld/server/helloWorld/bin
[mkdir] Created dir: /tmp/helloWorld/server/helloWorld/lib
[copy] Copying 2 files to /tmp/helloWorld/server/helloWorld
[copy] Copying 1 file to /tmp/helloWorld/server/helloWorld/src
[copy] Copying 2 files to /tmp/helloWorld/server/helloWorld/src
[copy] Copying 1 file to /tmp/helloWorld/server/helloWorld/src/or
g/bioconductor/rserviceJms/services/helloWorld
[echo] **** javac srcdir= /tmp/helloWorld/server/helloWorld/src
destdir=/tmp/helloWorld/server/helloWorld/bin ****
[javac] Compiling 3 source files to
/tmp/helloWorld/server/helloWorld/bin
[javac] /tmp/helloWorld/server/helloWorld/src/org/bioconductor/rse
rviceJms/services/helloWorld/helloWorldSoapBindingImpl.java:10: cannot
find symbol
[javac] symbol : class HelloWorld_PortType
[javac] location: package
org.bioconductor.rserviceJms.services.helloWorld
[javac] public class helloWorldSoapBindingImpl implements
org.bioconductor.rserviceJms.services.helloWorld.HelloWorld_PortType {
[javac]
^
[javac] 1 error
BUILD FAILED
/usr/lib/R/library/RWebServices/scripts/build.xml:1213: The following
error occurred while executing this line:
/usr/lib/R/library/RWebServices/scripts/build.xml:945: The following
error occurred while executing this line:
/usr/lib/R/library/RWebServices/scripts/build.xml:956: The following
error occurred while executing this line:
/usr/lib/R/library/RWebServices/scripts/build.xml:629: Compile failed;
see the compiler error output for details.
Total time: 7 seconds
-----------------
Note that the line number for the build.xml (629) is a little high
because I've inserted a couple <echo> lines while trying to find the
problem.
It should be more like 622, the line which reads:
<javac srcdir="${destdir}/src" destdir="${destdir}/bin">
Michael Shipway
mshipway at jhu.edu
Center for Cardiovascular Bioinformatics and Modeling
Institute for Computational Medicine
Johns Hopkins University
214 Computational Science & Engineering Building
3400 N. Charles St.
Baltimore, MD 21218
(410) 516-8616
