exon.pmcdf and mouseexon.pmcdf
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chunjiang he ▴ 80
@chunjiang-he-3439
Last seen 10.2 years ago
hi all, i want to know if these two R packages have the windows version. Thanks very much. Chunjiang [[alternative HTML version deleted]]
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@james-w-macdonald-5106
Last seen 1 day ago
United States
chunjiang he wrote: > hi all, > i want to know if these two R packages have the windows version. Thanks very > much. The short answer is no. This is because you will almost always need more than the 3 Gb or RAM that Windows 32-bit will be able to address. Theoretically you could get REvolution R Enterprise and then figure out how to build 64 bit versions of packages (if that is even supported - I don't know if it is). Or you could look here http://www.bioconductor.org/docs/workflows/oligoarrays/ and see if there is another way for you to go. Best, Jim > > Chunjiang > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826
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You may want to look at aroma.affymetrix also! See http://groups.google.com/group/aroma-affymetrix/?pli=1 -Lax On Mon, May 11, 2009 at 2:18 PM, James W. MacDonald <jmacdon@med.umich.edu>wrote: > chunjiang he wrote: > >> hi all, >> i want to know if these two R packages have the windows version. Thanks >> very >> much. >> > > The short answer is no. This is because you will almost always need more > than the 3 Gb or RAM that Windows 32-bit will be able to address. > Theoretically you could get REvolution R Enterprise and then figure out how > to build 64 bit versions of packages (if that is even supported - I don't > know if it is). > > Or you could look here > > http://www.bioconductor.org/docs/workflows/oligoarrays/ > > and see if there is another way for you to go. > > Best, > > Jim > > > >> Chunjiang >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor@stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > -- > James W. MacDonald, M.S. > Biostatistician > Douglas Lab > University of Michigan > Department of Human Genetics > 5912 Buhl > 1241 E. Catherine St. > Ann Arbor MI 48109-5618 > 734-615-7826 > > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]
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@michal-okoniewski-2676
Last seen 10.2 years ago
Hi Chunjiang Those two are metadata packages used for summarization, redone from Affy CDF files. They should install OK on Windows or Mac, however as they include all 1.4M or 1.2M(mouse) probesets, performing the summarization would require a lot of RAM. Alternatively go for aroma or xps (it uses proper pgf and bgp files) to summarize on a less powerful machine. Btw, the two packages that you mentioned are not required to run exonmap - if you have your AffyBatch or probeset lists from other sources you can use exonmap on those data. Cheers, Michal -----Original Message----- From: bioconductor-bounces@stat.math.ethz.ch on behalf of chunjiang he Sent: Mon 5/11/2009 8:04 PM To: bioconductor at stat.math.ethz.ch Subject: [BioC] exon.pmcdf and mouseexon.pmcdf hi all, i want to know if these two R packages have the windows version. Thanks very much. Chunjiang [[alternative HTML version deleted]] _______________________________________________ Bioconductor mailing list Bioconductor at stat.math.ethz.ch https://stat.ethz.ch/mailman/listinfo/bioconductor Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
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