David, Could you send your session info? I find no evidence that Ruuid is required to load the experiment data package you specified. (I would like to sort out any unspecified dependencies if there are any.) > library(hmyriB36) Loading required package: GGBase Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: GSEABase Loading required package: AnnotationDbi Loading required package: annotate Loading required package: graph Loading required package: snpMatrix Loading required package: survival Loading required package: splines Loading required package: RSQLite Loading required package: DBI > data(hmyriB36) > search() [1] ".GlobalEnv" "package:hmyriB36" "package:GGBase" [4] "package:RSQLite" "package:DBI" "package:snpMatrix" [7] "package:survival" "package:splines" "package:GSEABase" [10] "package:graph" "package:annotate" "package:AnnotationDbi" [13] "package:Biobase" "package:stats" "package:graphics" [16] "package:grDevices" "package:utils" "package:datasets" [19] "package:methods" "Autoloads" "package:base" > library(Ruuid) Error in library(Ruuid) : there is no package called 'Ruuid' > sessionInfo() R version 2.9.0 Patched (2009-04-25 r48402) i386-apple-darwin9.6.0 locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] splines stats graphics grDevices utils datasets methods [8] base other attached packages: [1] hmyriB36_0.99.0 GGBase_3.4.0 RSQLite_0.7-1 [4] DBI_0.2-4 snpMatrix_1.8.0 survival_2.35-4 [7] GSEABase_1.6.0 graph_1.22.0 annotate_1.22.0 [10] AnnotationDbi_1.6.0 Biobase_2.4.1 loaded via a namespace (and not attached): [1] cluster_1.11.13 tools_2.9.0 XML_2.3-0 xtable_1.5-5 Vincent Carey wrote: > try biocLite("Ruuid") -- there must be a dependency missing somewhere that > prevents > automatic success, and we will try to fix it, but for now a manual install > of Ruuid should > do it. > > On Thu, Apr 30, 2009 at 6:49 AM, David Edwards <david.edwards at="" agrsci.dk="">wrote: > > >> Dear list >> >> I am attempting to install the library hmyriB36 on a windows XP machine. >> The following occurs >> >> >>> source("http://bioconductor.org/biocLite.R") >>> >> Warning messages: >> 1: In safeSource() : Redefining 'biocinstall' >> 2: In safeSource() : Redefining 'biocinstallPkgGroups' >> 3: In safeSource() : Redefining 'biocinstallRepos' >> >>> biocLite("hmyriB36") >>> >> Running biocinstall version 2.4.10 with R version 2.9.0 >> Your version of R requires version 2.4 of Bioconductor. >> Warning: unable to access index for repository >> http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9 >> trying URL ' >> http://bioconductor.org/packages/2.4/data/experiment/bin/windows/co ntrib/2.9/hmyriB36_0.99.0.zip >> ' >> Content type 'application/zip' length 93084013 bytes (88.8 Mb) >> opened URL >> downloaded 88.8 Mb >> >> package 'hmyriB36' successfully unpacked and MD5 sums checked >> >> The downloaded packages are in >> C:\Documents and Settings\daed\Local >> Settings\Temp\RtmpbiJFRg\downloaded_packages >> updating HTML package descriptions >> >>> library(hmyriB36) >>> >> Loading required package: GGBase >> Loading required package: Biobase >> >> Welcome to Bioconductor >> >> Vignettes contain introductory material. To view, type >> 'openVignette()'. To cite Bioconductor, see >> 'citation("Biobase")' and for packages 'citation(pkgname)'. >> >> Loading required package: GSEABase >> Loading required package: AnnotationDbi >> Loading required package: annotate >> Loading required package: graph >> Loading required package: snpMatrix >> Loading required package: survival >> Loading required package: splines >> Loading required package: RSQLite >> Loading required package: DBI >> Error in loadNamespace(name) : there is no package called 'Ruuid' >> Error in as.environment(pos) : >> no item called "newtable" on the search list >> Error: package 'GGBase' could not be loaded >> >>> data(hmyriB36) >>> >> Warning message: >> In data(hmyriB36) : data set 'hmyriB36' not found >> >> What should I do? Any help would be gratefully received. >> >> BR David Edwards >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> > > > >