GEO has about 250,000 samples. On Apr 24, 2009, at 2:08 PM, Robert Gentleman wrote: > GEO or ArrayExpress are some places to start. This is probably in > the order of > 10's of thousands of arrays, so I don't think there is a > "comprehensive" list > and if there was one, I don't know what you would do with it. > > > Pete Shepard wrote: >> Hello List, >> >> Is there a comprehensive list of publicly available array data? >> >> TIA >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/ >> gmane.science.biology.informatics.conductor >> > > -- > Robert Gentleman, PhD > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > PO Box 19024 > Seattle, Washington 98109-1024 > 206-667-7700 > rgentlem at fhcrc.org > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor

On Fri, Apr 24, 2009 at 2:11 PM, Sean Davis <seandavi@gmail.com> wrote: > > > On Fri, Apr 24, 2009 at 2:05 PM, Pete Shepard <peter.shepard@gmail.com>wrote: > >> Hello List, >> >> Is there a comprehensive list of publicly available array data? > > > Hi, Pete. > > Have you looked into the NCBI GEO and EBI ArrayExpress databases? There > are interface packages for both databases in Bioconductor. > Also, I am not unbiased here, but if you are looking for something specific in GEO, you might try the GEOmetadb package.... Sean [[alternative HTML version deleted]]