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Ashwin Kumar ▴ 90
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Pete Shepard ▴ 240
@pete-shepard-3324
Last seen 10.3 years ago
Hello List, Is there a comprehensive list of publicly available array data? TIA [[alternative HTML version deleted]]
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GEO or ArrayExpress are some places to start. This is probably in the order of 10's of thousands of arrays, so I don't think there is a "comprehensive" list and if there was one, I don't know what you would do with it. Pete Shepard wrote: > Hello List, > > Is there a comprehensive list of publicly available array data? > > TIA > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Robert Gentleman, PhD Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 PO Box 19024 Seattle, Washington 98109-1024 206-667-7700 rgentlem at fhcrc.org
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GEO has about 250,000 samples. On Apr 24, 2009, at 2:08 PM, Robert Gentleman wrote: > GEO or ArrayExpress are some places to start. This is probably in > the order of > 10's of thousands of arrays, so I don't think there is a > "comprehensive" list > and if there was one, I don't know what you would do with it. > > > Pete Shepard wrote: >> Hello List, >> >> Is there a comprehensive list of publicly available array data? >> >> TIA >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at stat.math.ethz.ch >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/ >> gmane.science.biology.informatics.conductor >> > > -- > Robert Gentleman, PhD > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > PO Box 19024 > Seattle, Washington 98109-1024 > 206-667-7700 > rgentlem at fhcrc.org > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/ > gmane.science.biology.informatics.conductor
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Hi Pete, What kind of data? Marc Pete Shepard wrote: > Hello List, > > Is there a comprehensive list of publicly available array data? > > TIA > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > >
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On Fri, Apr 24, 2009 at 2:05 PM, Pete Shepard <peter.shepard@gmail.com>wrote: > Hello List, > > Is there a comprehensive list of publicly available array data? Hi, Pete. Have you looked into the NCBI GEO and EBI ArrayExpress databases? There are interface packages for both databases in Bioconductor. Sean [[alternative HTML version deleted]]
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On Fri, Apr 24, 2009 at 2:11 PM, Sean Davis <seandavi@gmail.com> wrote: > > > On Fri, Apr 24, 2009 at 2:05 PM, Pete Shepard <peter.shepard@gmail.com>wrote: > >> Hello List, >> >> Is there a comprehensive list of publicly available array data? > > > Hi, Pete. > > Have you looked into the NCBI GEO and EBI ArrayExpress databases? There > are interface packages for both databases in Bioconductor. > Also, I am not unbiased here, but if you are looking for something specific in GEO, you might try the GEOmetadb package.... Sean [[alternative HTML version deleted]]
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Pete Shepard ▴ 240
@pete-shepard-3324
Last seen 10.3 years ago
Dear List, Does anyone know if the sequences generated using mrna seq protocol fro Wang and Burge Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, Mayr C, Kingsmore SF, Schroth GP, Burge CB. (2008). Alternative Isoform Regulation in Human Tissue Transcriptomes. Nature *456,* 470-476. Full Text<http: www.nature.com="" nature="" journal="" v456="" n7221="" abs="" nature07509.h="" tml="">is piblicly available? TIA [[alternative HTML version deleted]]
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