stuck with creating CDF file for Affymetrix yeast tiling array.
1
0
Entering edit mode
@karthikeyan-sivaraman-3392
Last seen 10.5 years ago
i am trying to create a CDF file for the affymetrix tiling array (S. cerevisiae) - this is what i did: >library(pdInfoBuilder) >pkg=new("AffyTilingPDInfoPkgSeed", version="0.1", author="ddd", biocViews="AnnotationData", bpmapFile="Sc03b_MF_v04.bpmap", cifFile="Sco3b_MF_v04.cif", email="..... at .....") >makePdInfoPackage(pkg, destDir=".") and at this point - i get this error message: Error in gsub(nm[i], symbolValues[[i]], res) : invalid argument am stuck - can anyone please help me with pointer to proceed forward? Thanks a ton. Warm regards, k -- Only as high as I reach can I grow, Only as far as I seek can I go, Only as deep as I look can I see, Only as much as I dream can I be.
GO cdf GO cdf • 909 views
ADD COMMENT
0
Entering edit mode
Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 8.6 years ago
United States
Hi Karthikeyan, Can you please give us the output of sessionInfo() ? You might find the following posting guide helpful too: http://www.bioconductor.org/docs/postingGuide.html As for the package pdInfoBuilder, I can tell from the call you listed that whatever version you are using is not the most recent one. One of the changes is that the newer package is much better documented. You might want to try out the latest development version of this package as things have improved a lot. And, just in case you don't like the idea of using devel, there will be a released version April 21st. Marc Karthikeyan Sivaraman wrote: > i am trying to create a CDF file for the affymetrix tiling array (S. > cerevisiae) - > > this is what i did: > >> library(pdInfoBuilder) >> pkg=new("AffyTilingPDInfoPkgSeed", version="0.1", author="ddd", biocViews="AnnotationData", bpmapFile="Sc03b_MF_v04.bpmap", cifFile="Sco3b_MF_v04.cif", email="..... at .....") >> makePdInfoPackage(pkg, destDir=".") >> > > and at this point - i get this error message: > > Error in gsub(nm[i], symbolValues[[i]], res) : invalid argument > > am stuck - can anyone please help me with pointer to proceed forward? > > Thanks a ton. > > Warm regards, > k > > >
ADD COMMENT

Login before adding your answer.

Traffic: 499 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6