library xps
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@carissimotigemit-3363
Last seen 10.3 years ago
Dear all, j'using library xps for Human Exon 1.0 ST array and when j create the root scheme, ha heve the following: Importing </home> as <huex-1_0-st-v2.cxy>... <6553600> records imported...Finished New dataset <huex-1_0-st-v2> is added to Content... Importing </home> as <huex-1_0-st-v2.anp>... Number of probesets is <1425647>. <1425647> records read...Finished <1404858> records imported...Finished <1063119> exon annotations imported. Importing </home> as <huex-1_0-st-v2.scm>... Reading data from input file... Number of probesets is <1432143>. Note: Number of annotated probesets <1425647> is not equal to number of probesets <1432143>. Does someone know why? Annamaria Carissimo -- Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon Remember that it is always possible to send your donation Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx
xps xps • 904 views
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cstrato ★ 3.9k
@cstrato-908
Last seen 6.2 years ago
Austria
Dear Annamaria, The output you get is the expected output, so everything is ok! There is no error or warning message, this is simply a note that I added that the number of annotated probesets is less than the number of probesets in the pgf-file, i.e. Affymetrix did not list all probesets in its annotation file. Best regards Christian _._._._._._._._._._._._._._._._._._ C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a V.i.e.n.n.a A.u.s.t.r.i.a e.m.a.i.l: cstrato at aon.at _._._._._._._._._._._._._._._._._._ carissimo at tigem.it wrote: > Dear all, > > j'using library xps for Human Exon 1.0 ST array and when j create the root > scheme, ha heve the following: > > > Importing > </home> > as <huex-1_0-st-v2.cxy>... > <6553600> records imported...Finished > New dataset <huex-1_0-st-v2> is added to Content... > Importing > </home> > as <huex-1_0-st-v2.anp>... > Number of probesets is <1425647>. > <1425647> records read...Finished > <1404858> records imported...Finished > <1063119> exon annotations imported. > Importing > </home> > as <huex-1_0-st-v2.scm>... > Reading data from input file... > Number of probesets is <1432143>. > Note: Number of annotated probesets <1425647> is not equal to number of > probesets <1432143>. > > > Does someone know why? > > Annamaria Carissimo > > > -- > Ricordate che e' sempre possibile contribuire alla raccolta fondi di Telethon > Remember that it is always possible to send your donation > > Scoprilo alla pagina: http://www.telethon.it/comedonare/default.aspx > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > >
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