Dear all, I have problems with some of my microarray data (i use com.braju.sma package for R)... I am using ImaGene .txt files for two colour chips. If anyone is so kind to explain me how: 1.- to extract the signal from Arabidopsis gene raws without extract other signal from my slide 2.- to remove bad flagged genes from my dataset. Thanks ever so much for your help. Cristian T, S.Orsola Hospital Bologna- Italy Telefono/Phone: +390516363791 Fax: +390516363791 __________________________________________________________________ Tiscali ADSL e' SENZA CANONE, paghi solo quello che consumi! Abbonati subito, Gratis per te un anno di Supermail e tanti servizi in piu'! http://point.tiscali.it/adsl/index.shtml

AFAIK, com.braju.sma is not part of Bioconductor. If you need help, you might contact Henrik Bengtsson, who wrote this package, or look at his help page. http://www.maths.lth.se/help/R/com.braju.sma/ Jim James W. MacDonald Affymetrix and cDNA Microarray Core University of Michigan Cancer Center 1500 E. Medical Center Drive 7410 CCGC Ann Arbor MI 48109 734-647-5623 >>> <utepandragon@tiscali.it> 10/15/03 07:39AM >>> Dear all, I have problems with some of my microarray data (i use com.braju.sma package for R)... I am using ImaGene .txt files for two colour chips. If anyone is so kind to explain me how: 1.- to extract the signal from Arabidopsis gene raws without extract other signal from my slide 2.- to remove bad flagged genes from my dataset. Thanks ever so much for your help. Cristian T, S.Orsola Hospital Bologna- Italy Telefono/Phone: +390516363791 Fax: +390516363791 __________________________________________________________________ Tiscali ADSL e' SENZA CANONE, paghi solo quello che consumi! Abbonati subito, Gratis per te un anno di Supermail e tanti servizi in piu'! http://point.tiscali.it/adsl/index.shtml _______________________________________________ Bioconductor mailing list Bioconductor@stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor