Hi Steve, Have a look at http://bioinfo.cipf.es/aconesa/research2.html and then the Asca-genes package (Nueda et al., 2007). Paper can be found at http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btm251v1 hope this helps! Johan --- On Thu, 2/12/09, Nishant Gopalakrishnan <ngopalak at="" fhcrc.org=""> wrote: > From: Nishant Gopalakrishnan <ngopalak at="" fhcrc.org=""> > Subject: Re: [BioC] Any package for time course microarray data analysis? > To: "Steve Lianoglou" <mailinglist.honeypot at="" gmail.com=""> > Cc: "BioC" <bioconductor at="" stat.math.ethz.ch=""> > Date: Thursday, February 12, 2009, 7:13 PM > Hi Steve > > You can make use of the Bioconductor task views to locate > specific > packages for analyzing time course micro array data. > > The bioconductor task views can be found at > > http://bioconductor.org/packages/release/BiocViews.html > > The views provided by biocViews integrate the software, > annotation data > and experiment data repositories provided by Bioconductor. > Basically the > biocViews field in the Description file of each package > determines the > views under which it appears in. > > For packages that deal with time course stuff please take a > look at the > TimeCourse subview under statistics. > > http://bioconductor.org/packages/release/TimeCourse.html > > Nishant > > > > Steve Lianoglou wrote: > > Hi, > > > >> Hi! I am wondering whether you can suggest me some > R packages > >> designed for analyzing time course microarray > data. > > > > > > Yes, there appear to be several. > > > > Go to the bioconductor packages page: > > > > http://www.bioconductor.org/packages/release/bioc/ > > > > And search in that page for the word "time". > I see at least three > > packages there: > > > > * maSigPro > > * Mfuzz > > * timecourse > > > > There may be more ... I haven't used any of them, > so I really can't > > say too much more about it. > > > > HTH, > > -steve > > > > -- > > Steve Lianoglou > > Graduate Student: Physiology, Biophysics and Systems > Biology > > Weill Medical College of Cornell University > > > > http://cbio.mskcc.org/~lianos > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor at stat.math.ethz.ch > > https://stat.ethz.ch/mailman/listinfo/bioconductor > > Search the archives: > > > http://news.gmane.org/gmane.science.biology.informatics.conductor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor