Entering edit mode
João Fadista
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500
@joao-fadista-1942
Last seen 10.2 years ago
Hi,
I would like to know if there is any bioconductor (or other) tool that
is able to retrieve a batch of sequences from a fasta file, given the
desired genomic coordinates.
Desired genomic coordinates:
chr1 1 5
chr2 8 13
Example of a fasta input file:
>pig_chr1
acacactagagata
>pig_chr2
gagagagcgcgcatgtgt
Example of a fasta output file:
>pig_chr1_start1_end5
acaca
>pig_chr2_start8_end13
cgcgca
Med venlig hilsen / Regards
João Fadista
Ph.d. studerende / Ph.d. student
AARHUS UNIVERSITET / UNIVERSITY OF AARHUS
Det Jordbrugsvidenskabelige Fakultet / Faculty of Agricultural
Sciences
Inst. for Genetik og Bioteknologi / Dept. of Genetics and
Biotechnology
Blichers Allé 20, P.O. BOX 50
DK-8830 Tjele
Tel: +45 8999 1900
Direct: +45 8999 1342
Mobile: +45
E-mail: Joao.Fadista@agrsci.dk <mailto:joao.fadista@agrsci.dk>
Web: www.agrsci.dk <http: www.agrsci.dk=""/>
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