Dear list, After I downloaded the entrezg.cdf from MNBI website (huex10stv2hsentrezgcdf_11.0.1.tar.gz.gz), I unzipped it. However, I could not find .CDF file to be used in aroma.affymetrix. The only similar file I found is called "huex10stv2hsentrezgcdf.rda" in data folder. Can you tell me how to use this entrezfcdf in aroma.affymetrix? Thanks, Shirley

Dear Shirley, Thanks a lot for your interest in our custom CDF, you can go to http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF _download.asp#v11 and select link 'Click Me' for a custom CDF type, then the last column of the huge table is what you want. Best, Manhong > Date: Sun, 21 Dec 2008 18:02:17 -0500 > From: "shirley zhang" <shirley0818 at="" gmail.com=""> > Subject: [BioC] use alternative CDF in aroma.affymetrix in linux > To: "Bioconductor Mailing List" <bioconductor at="" stat.math.ethz.ch=""> > Message-ID: > <6fb73d020812211502k74245d0aj991b50931f7c59c5 at mail.gmail.com> > Content-Type: text/plain; charset=ISO-8859-1 > > Dear list, > > After I downloaded the entrezg.cdf from MNBI website > (huex10stv2hsentrezgcdf_11.0.1.tar.gz.gz), I unzipped it. However, I > could not find .CDF file to be used in aroma.affymetrix. The only > similar file I found is called "huex10stv2hsentrezgcdf.rda" in data > folder. Can you tell me how to use this entrezfcdf in > aroma.affymetrix? > > Thanks, > Shirley > > >