Dear Sir/Madame, I am looking for a software to analyze array (comparative genomic hybridization) CGH data that does not require genome mapping because I am working on ants, which genome sequence and mapping are not available. Thank you in advance. I appreciate your reply. Best regards, Mingkwan

On Mon, Dec 1, 2008 at 11:48 AM, Mingkwan Nipitwattanaphon <mingkwan.nipitwattanaphon@unil.ch> wrote: > Dear Sir/Madame, > > I am looking for a software to analyze array (comparative genomic > hybridization) CGH data that does not require genome mapping because I am > working on ants, which genome sequence and mapping are not available. > > Thank you in advance. I appreciate your reply. > CGH software usually makes assumptions about the ordering of probes along an assembly. If you have no idea what the ordering is, then using standard gene expression tools looking for "differential" hybridization for individual probes might be all that you can do. Sean [[alternative HTML version deleted]]