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Radek Blatny
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30
@radek-blatny-2982
Last seen 10.2 years ago
Actually, it does not work correctly, only upper graph is being
plotted and it is not interactive.
Begin forwarded message:
From: Radek Blatny <blatny@blatny.com>
Date: November 27, 2008 3:04:46 PM GMT+01:00
To:
Cc: Radek Blatny <blatny at="" blatny.com="">
Subject: snapCGH: "Error in segments(...
Hi,
I am getting this strange error, although the command seems to be
executed properly, because the data are being plotted anyway:
> zoomGenome(SegInfo.Hom.merged, array = 1)
Error in segments(y0 = current$M.predicted[breakpoints[-length
(breakpoints)], :
invalid first argument
>
> sessionInfo()
R version 2.7.1 (2008-06-23)
powerpc-apple-darwin8.10.1
locale:
C
attached base packages:
[1] splines grid tools stats graphics grDevices
utils
[8] datasets methods base
other attached packages:
[1] tilingArray_1.18.0 snapCGH_1.8.0 aCGH_1.14.0
[4] sma_0.5.15 multtest_1.20.0 cluster_1.11.11
[7] GLAD_1.16.0 DNAcopy_1.14.0 pixmap_0.4-9
[10] geneplotter_1.18.0 annotate_1.18.0 xtable_1.5-2
[13] AnnotationDbi_1.2.2 RSQLite_0.6-9 DBI_0.2-4
[16] genefilter_1.20.0 survival_2.34-1 vsn_3.6.0
[19] lattice_0.17-8 strucchange_1.3-4 sandwich_2.1-0
[22] zoo_1.5-4 RColorBrewer_1.0-2 affy_1.18.2
[25] preprocessCore_1.2.1 affyio_1.8.1 Biobase_2.0.1
[28] limma_2.14.5
loaded via a namespace (and not attached):
[1] KernSmooth_2.22-22
>
Thank you for any suggestions, Radek Blatny
Radek Blatny, MSc.
Institute of Molecular Genetics
Department of Mouse Molecular Genetics (Jiri Forejt unit)
Czech Academy of Sciences
Videnska 1083
142 20, Prague
Czech Republic
Tel. (+420) 241 062 260
Fax (+420) 241 062 154
http://www.img.cas.cz/mmg
email: blatny at img.cas.cz
Skype name: blatny
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