Hi! for the first time i am working on the affy human exon array and when using 'exonmap' and the exon.pmcdf i get the following error when calling rma > x.rma <- rma(raw.data) Error in .local(object, ...) : subscript out of bounds > sessionInfo() R version 2.8.0 Patched (2008-11-15 r46953) i386-apple-darwin9.5.0 locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] splines tools stats graphics grDevices utils datasets methods base other attached packages: [1] exon.pmcdf_1.1 exonmap_2.0.0 RMySQL_0.6-1 DBI_0.2-4 [5] RColorBrewer_1.0-2 genefilter_1.22.0 survival_2.34-1 affy_1.20.0 [9] Biobase_2.2.1 loaded via a namespace (and not attached): [1] AnnotationDbi_1.4.2 RSQLite_0.7-1 affyio_1.10.1 annotate_1.20.1 [5] preprocessCore_1.4.0 any suggestions anyone? thanks in advance Tobias ---------------------------------------------------------------------- Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, M?nchen D

sorry my fault. just realized that i am working on Gene 1.0ST and not Exon 1.0ST CEL files. On Nov 26, 2008, at 7:13 PM, Tobias Straub wrote: > Hi! > > for the first time i am working on the affy human exon array and > when using 'exonmap' and the exon.pmcdf i get the following error > when calling rma > > > x.rma <- rma(raw.data) > Error in .local(object, ...) : subscript out of bounds > > > sessionInfo() > R version 2.8.0 Patched (2008-11-15 r46953) > i386-apple-darwin9.5.0 > > locale: > en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] splines tools stats graphics grDevices utils > datasets methods base > > other attached packages: > [1] exon.pmcdf_1.1 exonmap_2.0.0 RMySQL_0.6-1 DBI_0.2-4 > [5] RColorBrewer_1.0-2 genefilter_1.22.0 survival_2.34-1 > affy_1.20.0 > [9] Biobase_2.2.1 > > loaded via a namespace (and not attached): > [1] AnnotationDbi_1.4.2 RSQLite_0.7-1 affyio_1.10.1 > annotate_1.20.1 > [5] preprocessCore_1.4.0 > > any suggestions anyone? > thanks in advance > Tobias > ---------------------------------------------------------------------- > Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, M?nchen D > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ---------------------------------------------------------------------- Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, M?nchen D