Dear Arnaud re the vignette build problem, there is a draft of a little tutorial describing one possible solution, that addresses Vince's suggestion, posted here: http://www.ebi.ac.uk/~huber/bigvig.pdf - I would also be interested in feedback / comments on this approach. - For the record: at some point, the PDF might disappear from the above URL and perhaps appear in R-news. Best wishes Wolfgang ---------------------------------------------------- Wolfgang Huber, EMBL-EBI, http://www.ebi.ac.uk/huber Vincent Carey ha scritto: > it is true that you might just submit the pdf file, but i think the Rnw > source should be available > in a non-building form. you can accomplish this by setting eval=FALSE on > chunks or by placing > the vignette source in a folder where it will not be built. it should be > possible for someone who > wants to wait for the vignette to compile to do so on their own, with > straightforward changes > > On Mon, Nov 17, 2008 at 5:02 PM, Richard Pearson < > richard.pearson at postgrad.manchester.ac.uk> wrote: > >> Arnaud >> >> You can get round the size problem by creating a separate data package (I >> did this with puma/pumadata). >> >> You can get round the vignette build problem by providing just the >> generated pdf file, and not the Rnw file. >> >> Best wishes >> >> Richard. >> >> >> >> Droit Arnaud wrote: >> >>> Hello All, >>> >>> I am going to create a package for the Bioconductor's submission. >>> >>> I have two problems to solve before submitting them : >>> First, we have included the CEL and bpmap files in our package. But the >>> size is more than 100 Mo. >>> What is the best solution to reduce it? May be, I could make it available >>> on another ftp server? >>> >>> Second, the time to run the R CMD check is more than 5 minutes. >>> Most of this time is required to build a Sweave vignette. Can I disable >>> the check command in the Rnw files? >>> >>> Thank you >>> >>> Arnaud. >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at stat.math.ethz.ch >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >>> >> -- >> Richard D. Pearson richard.pearson at postgrad.manchester.ac.uk >> School of Computer Science, http://www.cs.man.ac.uk/~pearsonr<http: www.cs.man.ac.uk="" %7epearsonr=""> >> University of Manchester, Tel: +44 161 275 6178 >> Oxford Road, Mob: +44 7971 221181 >> Manchester M13 9PL, UK. Fax: +44 161 275 6204