Clone ID to Gene symbol mapping for Hs?
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Tim Smith ★ 1.1k
@tim-smith-1532
Last seen 10.2 years ago
Hi, I was trying to map clone IDs to gene symbols for microarray data. I looked at the org.Hs.eg.db package, but this doesn't appear to have the mapping. Or should I be using some other package? thanks! [[alternative HTML version deleted]]
Microarray Microarray • 1.5k views
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@sean-davis-490
Last seen 3 months ago
United States
On Thu, Nov 13, 2008 at 2:19 PM, Tim Smith <tim_smith_666@yahoo.com> wrote: > Hi, > > I was trying to map clone IDs to gene symbols for microarray data. I looked > at the org.Hs.eg.db package, but this doesn't appear to have the mapping. > > Or should I be using some other package? Hi, Tim. There is not a package for doing this as far as I know. Look at Stanford Source: http://smd.stanford.edu/cgi-bin/source/sourceSearch If you feel that you need to do this within R, the only mapping that I know of is UniGene. You could parse the .dat files for your organism and pull these out, but the file format is not trivial. Sean [[alternative HTML version deleted]]
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